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Article Citation - WoS: 3Citation - Scopus: 3Correlations Between Hardness, Electrostatic Interactions, and Thermodynamic Parameters in the Decomposition Reactions of 3-Buten 3-Methoxy and Ethoxyethene(Springer/plenum Publishers, 2015) Hasanzadeh, Neda; Nori-Shargh, Davood; Kayi, Hakan; Javid, Nargess RezaeiDecomposition of the three isomeric compounds, 3-buten-1-ol (1), 3-methoxy-1-propene (2), and ethoxyethene (3), at two different (300 and 550 K) temperatures has been investigated by means of ab initio molecular orbital theory (MP2/6-311+G**//B3LYP/6-311+G**), hybrid-density functional theory (B3LYP/6-311+G**), the complete basis set, nuclear magnetic resonance analysis, and the electrostatic model associated with the dipole-dipole interactions. All three levels of theory showed that the calculated Gibbs free energy differences between the transition and ground state structures (Delta G (not equal)) increase from compound 1 to compound 3. The variations of the calculated Delta G (not equal) values can not be justified by the decrease of the calculated global hardness (eta) differences between the ground and transition states structures (i.e., Delta[eta(GS)-eta(TS)]). Based on the synchronicity indices, the transition state structures of compounds 1-3 involve synchronous aromatic transition structures, but there is no significant difference between their calculated synchronicity indices. The optimized geometries for the transition state structures of the decomposition reactions of compounds 1-3 consist in chair-like six-membered rings. The variation of the calculated activation entropy (Delta S (not equal)) values can not be justified by the decrease of Delta[eta(GS)-eta(TS)] parameter from compound 1 to compound 3. On the other hand, dipole moment differences between the ground and transition state structures [Delta(A mu (TS)-A mu (GS))] decrease from compound 1 to compound 3. Therefore, the electrostatic model associated with the dipole-dipole interactions justifies the increase of the calculated Delta G (not equal) values from compound 1 to compound 3. The correlations between Delta G (not equal), Delta[eta(GS)-eta(TS)], (Delta S (not equal)), k(T), electrostatic model, and structural parameters have been investigated.Article Citation - WoS: 5Citation - Scopus: 7Design of Novel Tellurium and Selenium Containing Semiconducting Polymers Using Quantum Mechanical Tools(Elsevier, 2017) Kaya, Birnur; Kayi, HakanStructural, optical and electronic properties of the two novel donor-acceptor-donor type conjugated polymers based on 4,7-di(selenophen-2-yl)benzo[c][1,2,5]selenadiazole (SeSeSe) and 4,7-di(tellurophen-2-yl)benzo[c][1,2,5]telluradiazole (TeTeTe) are investigated by means of quantum chemical calculations utilizing conventional and long-range corrected hybrid functionals. The lowest energy structures of the SeSeSe and TeTeTe monomers and oligomers are revealed through conformational analysis, while their electronic properties are obtained from density functional theory (DFT) molecular orbital calculations and optical properties are obtained from the time dependent DFT (TD-DFT) calculations for UV-vis absorption spectra. Electronic band gaps that directly affect the semiconducting properties of these novel polymers are calculated by using linear regression analysis of DFT data, and also periodic boundary conditions calculations (PBC-DFT). Our results indicate that SeSeSe and TeTeTe polymers have considerably lower band gap values than that of their furan-, thiophene-, benzooxadiazole- and benzothiadiazole-based analogs. The novel SeSeSe and TeTeTe polymers with improved optical and electronic properties may have an important role in the near future, especially for the optoelectronic and photovoltaic applications. (C) 2016 Elsevier B.V. All rights reserved.Article Citation - WoS: 8Citation - Scopus: 9Conformational Behaviors of Trans-2,3 Trans-2,5 a Complete Basis Set, Hybrid-Density Functional Theory Study and Natural Bond Orbital Interpretations(Springer, 2014) Nori-Shargh, Davood; Kayı, Hakan; Mousavi, Seiedeh Negar; Kayi, Hakan; Kayı, Hakan; Chemical Engineering; Chemical EngineeringComplete basis set CBS-4, hybrid-density functional theory (hybrid-DFT: B3LYP/6-311+G**) based methods and natural bond orbital (NBO) interpretations have been used to examine the contributions of the hyperconjugative, electrostatic, and steric effects on the conformational behaviors of trans-2,3-dihalo-1,4-diselenane [halo = F (1), Cl (2), Br (3)] and trans-2,5-dihalo-1,4-diselenane [halo = F (4), Cl (5), Br (6)]. Both levels of theory showed that the axial conformation stability, compared to its corresponding equatorial conformation, decreases from compounds 1 -> 3 and 4 -> 6. Based on the results obtained from the NBO analysis, there are significant anomeric effects for compounds 1-6. The anomeric effect associated with the electron delocalization is in favor of the axial conformation and increases from compounds 1 -> 3 and 4 -> 6. On the other hand, dipole moment differences between the axial and equatorial conformations [Delta(mu(eq) - mu(ax))] decrease from compounds 1 -> 3. Although Delta(mu(eq)-mu(ax)) parameter decreases from compound 1 to compound 3, the dipole moment values of the axial conformations are smaller than those of their corresponding equatorial conformations. Therefore, the anomeric effect associated with the electron delocalizations (for halogen-C-Se segments) and the electrostatic model associated with the dipole-dipole interactions fail to account for the increase of the equatorial conformations stability on going from compound 1 to compound 3. Since there is no dipole moment for the axial and equatorial conformations of compounds 4-6, consequently, the conformational preferences in compounds 1-6 is in general dictated by the steric hindrance factor associated with the 1,3-syn-axial repulsions. Importantly, the CBS-4 results show that the entropy difference (Delta S) between the equatorial axial conformations increases from compounds 1 -> 3 and 4 -> 6. This fact can be explained by the anomeric effect associated with the electron delocalization which affects the C-2-Se bond orders and increase the rigidity of the corresponding rings. The Gibbs free energy difference values between the axial and equatorial conformations (i.e. Delta G(ax-ax) and Delta G(eq-eq)) of compounds 1 and 4, 2 and 5 and also 3 and 6 have been calculated. The correlations between the anomeric effect, electrostatic model, Delta G(eq-ax), Delta G(ax-ax), Delta G(eq-eq), bond orders, dipole-dipole interactions, structural parameters and conformational behaviors of compounds 1-6 have been investigated.Article Citation - WoS: 10Citation - Scopus: 9A Computational Study on 4,7-Di(furan Monomer and Its Oligomers(Springer, 2014) Kayi, Hakan; Kayı, Hakan; Kayı, Hakan; Chemical Engineering; Chemical EngineeringThe energy gap, Eg, between the highest occupied molecular orbital (HOMO) and the lowest unoccupied molecular orbital (LUMO) energy levels that determines the electronic and optical properties of 4,7-di(furan-2yl)benzo[c][1,2,5]thiadiazole (FSF) polymer is calculated by performing quantum chemical calculations. First, we theoretically investigated the most stable conformers of FSF monomer and its corresponding oligomers at the B3LYP/6-31G(d) and B3LYP/LANL2DZ levels of theory. We reveal the theoretical molecular structure of this very recently synthesized novel monomer and its oligomers for the first time in the literature. Our results from the B3LYP/6-31G(d) calculations indicated that FSF polymer has a low HOMO-LUMO gap of 1.55 eV to be in good agreement with the experiments. Experimental design and synthesis of novel conjugated polymers require time-consuming and expensive procedures. The findings from this study are promising for the use of computational methods in the design of the novel conjugated polymers, and help to narrow the materials to be used in design and synthesis of conjugated polymers with desired properties.Article Citation - WoS: 9Citation - Scopus: 10A Theoretical Investigation of 4,7-Di(furan Donor-Acceptor Type Conjugated Polymer(Elsevier, 2015) Kayi, Hakan; Elkamel, AliQuantum chemical calculations are performed using density functional theory (DFT) to investigate the HOMO-LUMO energy gap of the 4,7-di(furan-2-yl)benzo[c][1,2,5]selenadiazole-based (FSeF) donor-acceptor type conjugated polymer which ascertains the optoelectronic properties and plays a crucial role, especially in polymeric solar cell applications. In this paper, the most stable conformers of the FSeF monomer and its corresponding oligomers are investigated at the B3LYP/Def2TZV and B3LYP/LANL2DZ levels of theory, and their molecular structures are revealed. The band gap of the polymer is determined by linear-fitting and extrapolation of the DFT data. This gap is found to be 1.44 eV and 1.45 eV by the B3LYP/Def2TZV, and B3LYP/LANL2DZ with PCM calculations, respectively. Our theoretical findings related to the band gap of the FSeF polymer (PFSeF) are in good agreement with other experimental studies in the literature and, hence, the theoretical methods used in this study are promising for the design of similar donor-acceptor type novel conjugated polymers. (C) 2014 Elsevier B.V. All rights reserved.Article Citation - WoS: 2Citation - Scopus: 3Experimental and Theoretical Investigation of the Reaction Between Co2 and Carbon Dioxide Binding Organic Liquids(Tubitak Scientific & Technological Research Council Turkey, 2016) Tankal, Hilal; Yuksel Orhan, Ozge; Alper, Erdogan; Ozdogan, Telhat; Kayi, HakanThe reaction kinetics of CO2 absorption into new carbon dioxide binding organic liquids (CO(2)BOLs) was comprehensively studied to evaluate their potential for CO2 removal. A stopped-flow apparatus with conductivity detection was used to determine the CO2 absorption kinetics of novel CO(2)BOLs composed of DBN (1,5-diazabicyclo[4.3.0]non-5-ene)/1-propanol and TBD (1,5,7-triazabicyclo[4.4.0]dec-5-ene)/1-butanol. A modified termolecular reaction mechanism for the reaction of CO2 with CO(2)BOLs was used to calculate the observed pseudo-first order rate constant k(0) (s(-1)) and second-order reaction rate constant k(2) (m(3)/kmol.s). Experiments were performed by varying organic base (DBN or TBD) weight percentage in alcohol medium for a temperature range of 288-308 K. It was found that k(0) increased with increasing amine concentration and temperature. By comparing using two different CO2BOL systems, it was observed that the TBD/1-butanol system has faster reaction kinetics than the DBN/1-propanol system. Finally, experimental and theoretical activation energies of these CO2BOL systems were obtained and compared. Quantum chemical calculations using spin restricted B3LYP and MP2 methods were utilized to reveal the structural and energetic details of the single-step termolecular reaction mechanism.Article Citation - WoS: 6Citation - Scopus: 7Natural Bond Orbital, Nuclear Magnetic Resonance Analysis and Hybrid-Density Functional Theory Study of Σ-Aromaticity in Al2f6< Al2cl6< Al2br6< and Al2i6<(Springer, 2013) Nori-Shargh, Davood; Kayı, Hakan; Yahyaei, Hooriye; Mousavi, Seiedeh Negar; Maasoomi, Akram; Kayi, Hakan; Kayı, Hakan; Chemical Engineering; Chemical EngineeringNatural bond orbital (NBO), nuclear magnetic resonance (NMR) analysis and hybrid-density functional theory based method (B3LYP/Def2-TZVPP) were used to investigate the correlation between the nucleus-independent chemical shifts [NICS, as an aromaticity criterion], sigma (Al(1)-X2(b)) -> sigma*(Al(3)-X4(b)) electron delocalizations and the dissociation energies of Al2F6, Al2Cl6, Al2Br6 and Al2I6 to 2AlX(3) (X = F, Cl, Br, I). The results obtained showed that the dissociation energies of Al2F6, Al2Cl6, Al2Br6 and Al2I6 decrease from Al2F6 to Al2I6. Like aromatic molecules, these compounds have relatively significant negative NICSiso(0) values. Clearly, based on magnetic criteria, they exhibit aromatic character and make it possible to consider them as sigma-delocalized aromatic species, such as Mobius sigma-aromatic species. The sigma-aromatic character which is demonstrated by their NICSiso(0) values decreases from Al2F6 to Al2I6. The NICSiso values are dominated by the in-plane sigma(22) (i.e., sigma(yy,) the plane containing halogen atoms bridged) chemical shift components. The increase of the NICSiso values explains significantly the decrease of the corresponding dissociation energies of Al2F6, Al2Cl6, Al2Br6 and Al2I6. Importantly, the NBO results suggest that in these compounds the dissociation energies are controlled by the stabilization energies associated with sigma (Al(1)-X2(b)) ->sigma*(Al(3)-X4(b)) electron delocalizations. The decrease of the stabilization energies associated with sigma (Al(1)-X2(b)) ->sigma*(Al(3)-X4(b)) electron delocalizations is in accordance with the variation of the calculated NICSiso values. The correlations between the dissociation energies of Al2F6, Al2Cl6, Al2Br6 and Al2I6, sigma (Al(1)-X2(b)) ->sigma*(Al(3)-X4(b)) electron delocalizations, natural atomic orbitals (NAOs) and NICSiso values have been investigated.
