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Article Citation - WoS: 2Citation - Scopus: 3A Hybrid Approach for Semantic Image Annotation(Ieee-inst Electrical Electronics Engineers inc, 2021) Sezen, Arda; Turhan, Cigdem; Sengul, GokhanIn this study, a framework that generates natural language descriptions of images within a controlled environment is proposed. Previous work on neural networks mostly focused on choosing the right labels and/or increasing the number of related labels to depict an image. However, creating a textual description of an image is a completely different phenomenon, structurally, syntactically, and semantically. The proposed semantic image annotation framework presents a novel combination of deep learning models and aligned annotation results derived from the instances of the ontology classes to generate sentential descriptions of images. Our hybrid approach benefits from the unique combination of deep learning and semantic web technologies. We detect objects from unlabeled sports images using a deep learning model based on a residual network and a feature pyramid network, with the focal loss technique to obtain predictions with high probability. The proposed framework not only produces probabilistically labeled images, but also the contextual results obtained from a knowledge base exploiting the relationship between the objects. The framework's object detection and prediction performances are tested with two datasets where the first one includes individual instances of images containing everyday scenes of common objects and the second custom dataset contains sports images collected from the web. Moreover, a sample image set is created to obtain annotation result data by applying all framework layers. Experimental results show that the framework is effective in this controlled environment and can be used with other applications via web services within the supported sports domain.Article Citation - WoS: 32Citation - Scopus: 39Backhaul-Aware Optimization of Uav Base Station Location and Bandwidth Allocation for Profit Maximization(Ieee-inst Electrical Electronics Engineers inc, 2020) Cicek, Cihan Tugrul; Gultekin, Hakan; Tavli, Bulent; Yanikomeroglu, HalimUnmanned Aerial Vehicle Base Stations (UAV-BSs) are envisioned to be an integral component of the next generation Wireless Communications Networks (WCNs) with a potential to create opportunities for enhancing the capacity of the network by dynamically moving the supply towards the demand while facilitating the services that cannot be provided via other means efficiently. A significant drawback of the state-of-the-art have been designing a WCN in which the service-oriented performance measures (e.g., throughput) are optimized without considering different relevant decisions such as determining the location and allocating the resources, jointly. In this study, we address the UAV-BS location and bandwidth allocation problems together to optimize the total network profit. In particular, a Mixed-Integer Non-Linear Programming (MINLP) formulation is developed, in which the location of a single UAV-BS and bandwidth allocations to users are jointly determined. The objective is to maximize the total profit without exceeding the backhaul and access capacities. The profit gained from a specific user is assumed to be a piecewise-linear function of the provided data rate level, where higher data rate levels would yield higher profit. Due to high complexity of the MINLP, we propose an efficient heuristic algorithm with lower computational complexity. We show that, when the UAV-BS location is determined, the resource allocation problem can be reduced to a Multidimensional Binary Knapsack Problem (MBKP), which can be solved in pseudo-polynomial time. To exploit this structure, the optimal bandwidth allocations are determined by solving several MBKPs in a search algorithm. We test the performance of our algorithm with two heuristics and with the MINLP model solved by a commercial solver. Our numerical results show that the proposed algorithm outperforms the alternative solution approaches and would be a promising tool to improve the total network profit.Article Citation - WoS: 26Citation - Scopus: 36Exploratory Analysis of Topic Interests and Their Evolution in Bioinformatics Research Using Semantic Text Mining and Probabilistic Topic Modeling(Ieee-inst Electrical Electronics Engineers inc, 2022) Gurcan, Fatih; Cagiltay, Nergiz ErcilBioinformatics, which has developed rapidly in recent years with the collaborative contributions of the fields of biology and informatics, provides a deeper perspective on the analysis and understanding of complex biological data. In this regard, bioinformatics has an interdisciplinary background and a rich literature in terms of domain-specific studies. Providing a holistic picture of bioinformatics research by analyzing the major topics and their trends and developmental stages is critical for an understanding of the field. From this perspective, this study aimed to analyze the last 50 years of bioinformatics studies (a total of 71,490 articles) by using an automated text-mining methodology based on probabilistic topic modeling to reveal the main topics, trends, and the evolution of the field. As a result, 24 major topics that reflect the focuses and trends of the field were identified. Based on the discovered topics and their temporal tendencies from 1970 until 2020, the developmental periods of the field were divided into seven phases, from the "newborn" to the "wisdom" stages. Moreover, the findings indicated a recent increase in the popularity of the topics "Statistical Estimation", "Data Analysis Tools", "Genomic Data", "Gene Expression", and "Prediction". The results of the study revealed that, in bioinformatics studies, interest in innovative computing and data analysis methods based on artificial intelligence and machine learning has gradually increased, thereby marking a significant improvement in contemporary analysis tools and techniques based on prediction.
