Fluorescent and Electrochemical Detection of Nuclease Activity Associated With <i>streptococcus Pneumoniae</I> Using Specific Oligonucleotide Probes

dc.contributor.author Goikoetxea, Garazi
dc.contributor.author Akhtar, Khadija-Tul Kubra
dc.contributor.author Prysiazhniuk, Alona
dc.contributor.author Borsa, Baris A.
dc.contributor.author Aldag, Mehmet Ersoy
dc.contributor.author Kavruk, Murat
dc.contributor.author Hernandez, Frank J.
dc.date.accessioned 2024-11-05T20:19:03Z
dc.date.available 2024-11-05T20:19:03Z
dc.date.issued 2024
dc.description Goikoetxea, Garazi/0009-0005-7483-3632; Hernandez, Frank J./0000-0001-6308-8087; Kavruk, Murat/0000-0001-5331-7253 en_US
dc.description.abstract Streptococcus pneumoniae (S. pneumoniae) represents a significant pathogenic threat, often responsible for community-acquired pneumonia with potentially life-threatening consequences if left untreated. This underscores the pressing clinical need for rapid and accurate detection of this harmful bacteria. In this study, we report the screening and discovery of a novel biomarker for S. pneumoniae detection. We used S. pneumoniae nucleases as biomarker and we have identified a specific oligonucleotide that works as substrate. This biomarker relies on a specific nuclease activity found on the bacterial membrane, forming the basis for the development of both fluorescence and electrochemical biosensors. We observed an exceptionally high sensitivity in the performance of the electrochemical biosensor, detecting as low as 10(2) CFU mL(-1), whereas the fluorescence sensor demonstrated comparatively lower efficiency, with a detection limit of 10(6) CFU mL(-1). Moreover, the specificity studies have demonstrated the biosensors' remarkable capacity to identify S. pneumoniae from other pathogenic bacteria. Significantly, both biosensors have demonstrated the ability to identify S. pneumoniae cultured from clinical samples, providing compelling evidence of the potential clinical utility of this innovative detection system. en_US
dc.description.sponsorship Vetenskapsrdet [LiU-301097, KAW 2022.0198]; Knut and Alice Wallenberg Foundation [2021-05641]; Swedish Research Council; Swedish Research Council [2021-05641] Funding Source: Swedish Research Council en_US
dc.description.sponsorship This work was supported by the Knut and Alice Wallenberg Foundation (Grant: LiU-301097, FJH), KAW Support for Ukrainian Researchers (Grant: KAW 2022.0198, AP), and The Swedish Research Council (Grant: 2021-05641, FJH). en_US
dc.identifier.doi 10.1039/d3an01532g
dc.identifier.issn 0003-2654
dc.identifier.issn 1364-5528
dc.identifier.scopus 2-s2.0-85182934550
dc.identifier.uri https://doi.org/10.1039/d3an01532g
dc.identifier.uri https://hdl.handle.net/20.500.14411/10254
dc.language.iso en en_US
dc.publisher Royal Soc Chemistry en_US
dc.relation.ispartof The Analyst
dc.rights info:eu-repo/semantics/openAccess en_US
dc.subject [No Keyword Available] en_US
dc.title Fluorescent and Electrochemical Detection of Nuclease Activity Associated With <i>streptococcus Pneumoniae</I> Using Specific Oligonucleotide Probes en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.id Goikoetxea, Garazi/0009-0005-7483-3632
gdc.author.id Hernandez, Frank J./0000-0001-6308-8087
gdc.author.id Kavruk, Murat/0000-0001-5331-7253
gdc.author.scopusid 57329467300
gdc.author.scopusid 57211845147
gdc.author.scopusid 56646534300
gdc.author.scopusid 55946080400
gdc.author.scopusid 57191821696
gdc.author.scopusid 55279809300
gdc.author.scopusid 6504450287
gdc.author.wosid Goikoetxea, Garazi/KAO-3011-2024
gdc.author.wosid Özalp, Veli/B-2940-2009
gdc.author.wosid Hernandez, Frank J./G-5583-2017
gdc.author.wosid Kavruk, Murat/O-6694-2016
gdc.bip.impulseclass C5
gdc.bip.influenceclass C5
gdc.bip.popularityclass C4
gdc.coar.access open access
gdc.coar.type text::journal::journal article
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gdc.description.department Atılım University en_US
gdc.description.departmenttemp [Goikoetxea, Garazi; Akhtar, Khadija-Tul Kubra; Prysiazhniuk, Alona; Borsa, Baris A.; Hernandez, Frank J.] Linkoping Univ, Nucl Acids Technol Lab, NAT Lab, S-58185 Linkoping, Sweden; [Goikoetxea, Garazi] Univ Basque Country UPV EHU, Fac Med & Odontol, Dept Cellular Biol & Histol, Leioa 48940, Spain; [Goikoetxea, Garazi] SOMAprobes SL Donostia, San Sebastian 20009, Spain; [Akhtar, Khadija-Tul Kubra; Prysiazhniuk, Alona; Borsa, Baris A.; Hernandez, Frank J.] Linkoping Univ, Wallenberg Ctr Mol Med, S-58185 Linkoping, Sweden; [Akhtar, Khadija-Tul Kubra; Prysiazhniuk, Alona; Borsa, Baris A.; Hernandez, Frank J.] Linkoping Univ, Dept Phys Chem & Biol, S-58185 Linkoping, Sweden; [Prysiazhniuk, Alona] Taras Shevchenko Natl Univ Kyiv, Kiev, Ukraine; [Aldag, Mehmet Ersoy] Prof Dr A Ilhan Ozdemir State Hosp, Giresun, Turkiye; [Kavruk, Murat] Istanbul Aydin Univ, Fac Med, Dept Med Biol, Istanbul, Turkiye; [Ozalp, Veli C.] Atilim Univ, Dept Med Biol, TR-06830 Ankara, Turkiye en_US
gdc.description.endpage 1296 en_US
gdc.description.issue 4 en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q2
gdc.description.startpage 1289 en_US
gdc.description.volume 149 en_US
gdc.description.woscitationindex Science Citation Index Expanded
gdc.description.wosquality Q2
gdc.identifier.openalex W4391025936
gdc.identifier.pmid 38240377
gdc.identifier.wos WOS:001145467500001
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gdc.oaire.impulse 3.0
gdc.oaire.influence 2.5288758E-9
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gdc.oaire.keywords Streptococcus pneumoniae
gdc.oaire.keywords Bacteria
gdc.oaire.keywords Oligonucleotide Probes
gdc.oaire.keywords Biomarkers
gdc.oaire.popularity 4.5919917E-9
gdc.oaire.publicfunded false
gdc.oaire.sciencefields 0301 basic medicine
gdc.oaire.sciencefields 0303 health sciences
gdc.oaire.sciencefields 03 medical and health sciences
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gdc.opencitations.count 4
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gdc.scopus.citedcount 7
gdc.virtual.author Kavruk, Murat
gdc.wos.citedcount 7
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