Fluorescent and Electrochemical Detection of Nuclease Activity Associated With <i>streptococcus Pneumoniae</I> Using Specific Oligonucleotide Probes
dc.authorid | Goikoetxea, Garazi/0009-0005-7483-3632 | |
dc.authorid | Hernandez, Frank J./0000-0001-6308-8087 | |
dc.authorid | Kavruk, Murat/0000-0001-5331-7253 | |
dc.authorscopusid | 57329467300 | |
dc.authorscopusid | 57211845147 | |
dc.authorscopusid | 56646534300 | |
dc.authorscopusid | 55946080400 | |
dc.authorscopusid | 57191821696 | |
dc.authorscopusid | 55279809300 | |
dc.authorscopusid | 6504450287 | |
dc.authorwosid | Goikoetxea, Garazi/KAO-3011-2024 | |
dc.authorwosid | Özalp, Veli/B-2940-2009 | |
dc.authorwosid | Hernandez, Frank J./G-5583-2017 | |
dc.authorwosid | Kavruk, Murat/O-6694-2016 | |
dc.contributor.author | Goikoetxea, Garazi | |
dc.contributor.author | Akhtar, Khadija-Tul Kubra | |
dc.contributor.author | Prysiazhniuk, Alona | |
dc.contributor.author | Borsa, Baris A. | |
dc.contributor.author | Aldag, Mehmet Ersoy | |
dc.contributor.author | Kavruk, Murat | |
dc.contributor.author | Hernandez, Frank J. | |
dc.contributor.other | Nutrition and Dietetics | |
dc.date.accessioned | 2024-11-05T20:19:03Z | |
dc.date.available | 2024-11-05T20:19:03Z | |
dc.date.issued | 2024 | |
dc.department | Atılım University | en_US |
dc.department-temp | [Goikoetxea, Garazi; Akhtar, Khadija-Tul Kubra; Prysiazhniuk, Alona; Borsa, Baris A.; Hernandez, Frank J.] Linkoping Univ, Nucl Acids Technol Lab, NAT Lab, S-58185 Linkoping, Sweden; [Goikoetxea, Garazi] Univ Basque Country UPV EHU, Fac Med & Odontol, Dept Cellular Biol & Histol, Leioa 48940, Spain; [Goikoetxea, Garazi] SOMAprobes SL Donostia, San Sebastian 20009, Spain; [Akhtar, Khadija-Tul Kubra; Prysiazhniuk, Alona; Borsa, Baris A.; Hernandez, Frank J.] Linkoping Univ, Wallenberg Ctr Mol Med, S-58185 Linkoping, Sweden; [Akhtar, Khadija-Tul Kubra; Prysiazhniuk, Alona; Borsa, Baris A.; Hernandez, Frank J.] Linkoping Univ, Dept Phys Chem & Biol, S-58185 Linkoping, Sweden; [Prysiazhniuk, Alona] Taras Shevchenko Natl Univ Kyiv, Kiev, Ukraine; [Aldag, Mehmet Ersoy] Prof Dr A Ilhan Ozdemir State Hosp, Giresun, Turkiye; [Kavruk, Murat] Istanbul Aydin Univ, Fac Med, Dept Med Biol, Istanbul, Turkiye; [Ozalp, Veli C.] Atilim Univ, Dept Med Biol, TR-06830 Ankara, Turkiye | en_US |
dc.description | Goikoetxea, Garazi/0009-0005-7483-3632; Hernandez, Frank J./0000-0001-6308-8087; Kavruk, Murat/0000-0001-5331-7253 | en_US |
dc.description.abstract | Streptococcus pneumoniae (S. pneumoniae) represents a significant pathogenic threat, often responsible for community-acquired pneumonia with potentially life-threatening consequences if left untreated. This underscores the pressing clinical need for rapid and accurate detection of this harmful bacteria. In this study, we report the screening and discovery of a novel biomarker for S. pneumoniae detection. We used S. pneumoniae nucleases as biomarker and we have identified a specific oligonucleotide that works as substrate. This biomarker relies on a specific nuclease activity found on the bacterial membrane, forming the basis for the development of both fluorescence and electrochemical biosensors. We observed an exceptionally high sensitivity in the performance of the electrochemical biosensor, detecting as low as 10(2) CFU mL(-1), whereas the fluorescence sensor demonstrated comparatively lower efficiency, with a detection limit of 10(6) CFU mL(-1). Moreover, the specificity studies have demonstrated the biosensors' remarkable capacity to identify S. pneumoniae from other pathogenic bacteria. Significantly, both biosensors have demonstrated the ability to identify S. pneumoniae cultured from clinical samples, providing compelling evidence of the potential clinical utility of this innovative detection system. | en_US |
dc.description.sponsorship | Vetenskapsrdet [LiU-301097, KAW 2022.0198]; Knut and Alice Wallenberg Foundation [2021-05641]; Swedish Research Council; Swedish Research Council [2021-05641] Funding Source: Swedish Research Council | en_US |
dc.description.sponsorship | This work was supported by the Knut and Alice Wallenberg Foundation (Grant: LiU-301097, FJH), KAW Support for Ukrainian Researchers (Grant: KAW 2022.0198, AP), and The Swedish Research Council (Grant: 2021-05641, FJH). | en_US |
dc.description.woscitationindex | Science Citation Index Expanded | |
dc.identifier.doi | 10.1039/d3an01532g | |
dc.identifier.endpage | 1296 | en_US |
dc.identifier.issn | 0003-2654 | |
dc.identifier.issn | 1364-5528 | |
dc.identifier.issue | 4 | en_US |
dc.identifier.pmid | 38240377 | |
dc.identifier.scopus | 2-s2.0-85182934550 | |
dc.identifier.scopusquality | Q2 | |
dc.identifier.startpage | 1289 | en_US |
dc.identifier.uri | https://doi.org/10.1039/d3an01532g | |
dc.identifier.uri | https://hdl.handle.net/20.500.14411/10254 | |
dc.identifier.volume | 149 | en_US |
dc.identifier.wos | WOS:001145467500001 | |
dc.identifier.wosquality | Q2 | |
dc.institutionauthor | Kavruk, Murat | |
dc.language.iso | en | en_US |
dc.publisher | Royal Soc Chemistry | en_US |
dc.relation.publicationcategory | Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı | en_US |
dc.rights | info:eu-repo/semantics/openAccess | en_US |
dc.subject | [No Keyword Available] | en_US |
dc.title | Fluorescent and Electrochemical Detection of Nuclease Activity Associated With <i>streptococcus Pneumoniae</I> Using Specific Oligonucleotide Probes | en_US |
dc.type | Article | en_US |
dspace.entity.type | Publication | |
relation.isAuthorOfPublication | fc163a65-a9d1-4bf6-92fc-009e43e8ba4f | |
relation.isAuthorOfPublication.latestForDiscovery | fc163a65-a9d1-4bf6-92fc-009e43e8ba4f | |
relation.isOrgUnitOfPublication | 2071c428-f13d-4e73-b6f2-9902e8f00103 | |
relation.isOrgUnitOfPublication.latestForDiscovery | 2071c428-f13d-4e73-b6f2-9902e8f00103 |