Fluorescent and Electrochemical Detection of Nuclease Activity Associated With <i>streptococcus Pneumoniae</I> Using Specific Oligonucleotide Probes

dc.authoridGoikoetxea, Garazi/0009-0005-7483-3632
dc.authoridHernandez, Frank J./0000-0001-6308-8087
dc.authoridKavruk, Murat/0000-0001-5331-7253
dc.authorscopusid57329467300
dc.authorscopusid57211845147
dc.authorscopusid56646534300
dc.authorscopusid55946080400
dc.authorscopusid57191821696
dc.authorscopusid55279809300
dc.authorscopusid6504450287
dc.authorwosidGoikoetxea, Garazi/KAO-3011-2024
dc.authorwosidÖzalp, Veli/B-2940-2009
dc.authorwosidHernandez, Frank J./G-5583-2017
dc.authorwosidKavruk, Murat/O-6694-2016
dc.contributor.authorGoikoetxea, Garazi
dc.contributor.authorAkhtar, Khadija-Tul Kubra
dc.contributor.authorPrysiazhniuk, Alona
dc.contributor.authorBorsa, Baris A.
dc.contributor.authorAldag, Mehmet Ersoy
dc.contributor.authorKavruk, Murat
dc.contributor.authorHernandez, Frank J.
dc.contributor.otherNutrition and Dietetics
dc.date.accessioned2024-11-05T20:19:03Z
dc.date.available2024-11-05T20:19:03Z
dc.date.issued2024
dc.departmentAtılım Universityen_US
dc.department-temp[Goikoetxea, Garazi; Akhtar, Khadija-Tul Kubra; Prysiazhniuk, Alona; Borsa, Baris A.; Hernandez, Frank J.] Linkoping Univ, Nucl Acids Technol Lab, NAT Lab, S-58185 Linkoping, Sweden; [Goikoetxea, Garazi] Univ Basque Country UPV EHU, Fac Med & Odontol, Dept Cellular Biol & Histol, Leioa 48940, Spain; [Goikoetxea, Garazi] SOMAprobes SL Donostia, San Sebastian 20009, Spain; [Akhtar, Khadija-Tul Kubra; Prysiazhniuk, Alona; Borsa, Baris A.; Hernandez, Frank J.] Linkoping Univ, Wallenberg Ctr Mol Med, S-58185 Linkoping, Sweden; [Akhtar, Khadija-Tul Kubra; Prysiazhniuk, Alona; Borsa, Baris A.; Hernandez, Frank J.] Linkoping Univ, Dept Phys Chem & Biol, S-58185 Linkoping, Sweden; [Prysiazhniuk, Alona] Taras Shevchenko Natl Univ Kyiv, Kiev, Ukraine; [Aldag, Mehmet Ersoy] Prof Dr A Ilhan Ozdemir State Hosp, Giresun, Turkiye; [Kavruk, Murat] Istanbul Aydin Univ, Fac Med, Dept Med Biol, Istanbul, Turkiye; [Ozalp, Veli C.] Atilim Univ, Dept Med Biol, TR-06830 Ankara, Turkiyeen_US
dc.descriptionGoikoetxea, Garazi/0009-0005-7483-3632; Hernandez, Frank J./0000-0001-6308-8087; Kavruk, Murat/0000-0001-5331-7253en_US
dc.description.abstractStreptococcus pneumoniae (S. pneumoniae) represents a significant pathogenic threat, often responsible for community-acquired pneumonia with potentially life-threatening consequences if left untreated. This underscores the pressing clinical need for rapid and accurate detection of this harmful bacteria. In this study, we report the screening and discovery of a novel biomarker for S. pneumoniae detection. We used S. pneumoniae nucleases as biomarker and we have identified a specific oligonucleotide that works as substrate. This biomarker relies on a specific nuclease activity found on the bacterial membrane, forming the basis for the development of both fluorescence and electrochemical biosensors. We observed an exceptionally high sensitivity in the performance of the electrochemical biosensor, detecting as low as 10(2) CFU mL(-1), whereas the fluorescence sensor demonstrated comparatively lower efficiency, with a detection limit of 10(6) CFU mL(-1). Moreover, the specificity studies have demonstrated the biosensors' remarkable capacity to identify S. pneumoniae from other pathogenic bacteria. Significantly, both biosensors have demonstrated the ability to identify S. pneumoniae cultured from clinical samples, providing compelling evidence of the potential clinical utility of this innovative detection system.en_US
dc.description.sponsorshipVetenskapsrdet [LiU-301097, KAW 2022.0198]; Knut and Alice Wallenberg Foundation [2021-05641]; Swedish Research Council; Swedish Research Council [2021-05641] Funding Source: Swedish Research Councilen_US
dc.description.sponsorshipThis work was supported by the Knut and Alice Wallenberg Foundation (Grant: LiU-301097, FJH), KAW Support for Ukrainian Researchers (Grant: KAW 2022.0198, AP), and The Swedish Research Council (Grant: 2021-05641, FJH).en_US
dc.description.woscitationindexScience Citation Index Expanded
dc.identifier.doi10.1039/d3an01532g
dc.identifier.endpage1296en_US
dc.identifier.issn0003-2654
dc.identifier.issn1364-5528
dc.identifier.issue4en_US
dc.identifier.pmid38240377
dc.identifier.scopus2-s2.0-85182934550
dc.identifier.scopusqualityQ2
dc.identifier.startpage1289en_US
dc.identifier.urihttps://doi.org/10.1039/d3an01532g
dc.identifier.urihttps://hdl.handle.net/20.500.14411/10254
dc.identifier.volume149en_US
dc.identifier.wosWOS:001145467500001
dc.identifier.wosqualityQ2
dc.institutionauthorKavruk, Murat
dc.language.isoenen_US
dc.publisherRoyal Soc Chemistryen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/openAccessen_US
dc.subject[No Keyword Available]en_US
dc.titleFluorescent and Electrochemical Detection of Nuclease Activity Associated With <i>streptococcus Pneumoniae</I> Using Specific Oligonucleotide Probesen_US
dc.typeArticleen_US
dspace.entity.typePublication
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relation.isOrgUnitOfPublication2071c428-f13d-4e73-b6f2-9902e8f00103
relation.isOrgUnitOfPublication.latestForDiscovery2071c428-f13d-4e73-b6f2-9902e8f00103

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