Direct Detection of Viral Infections From Swab Samples by Probe-Gated Silica Nanoparticle-Based Lateral Flow Assay

dc.contributor.author Durdabak, Dilara Buse
dc.contributor.author Dogan, Soner
dc.contributor.author Tekol, Serap Demir
dc.contributor.author Celik, Caner
dc.contributor.author Ozalp, Veli Cengiz
dc.contributor.author Tuna, Bilge Guvenc
dc.contributor.other Basic Sciences
dc.date.accessioned 2024-07-05T15:22:15Z
dc.date.available 2024-07-05T15:22:15Z
dc.date.issued 2024
dc.description Tuna, Bilge Guvenc/0000-0003-1348-1336; Özalp, Veli Cengiz/0000-0002-7659-5990; YALCINKAYA, DILARA BUSE/0000-0002-8712-2179 en_US
dc.description.abstract Point-of-care diagnosis is crucial to control the spreading of viral infections. Here, universal-modifiable probe-gated silica nanoparticles (SNPs) based lateral flow assay (LFA) is developed in the interest of the rapid and early detection of viral infections. The most superior advantage of the rapid assay is its utility in detecting various sides of the virus directly from the human swab samples and its adaptability to detect various types of viruses. For this purpose, a high concentration of fluorescein and rhodamine B as a reporting material was loaded into SNPs with excellent loading capacity and measured using standard curve, 4.19 mu mol & sdot; g-1 and 1.23 mu mol & sdot; g-1, respectively. As a model organism, severe acute respiratory syndrome coronavirus-2 (CoV-2) infections were selected by targeting its nonstructural (NSP9, NSP12) and envelope (E) genes as target sites of the virus. We showed that NSP12-gated SNPs-based LFA significantly outperformed detection of viral infection in 15 minutes from 0.73 pg & sdot; mL-1 synthetic viral solution and with a dilution of 1 : 103 of unprocessed human samples with an increasing test line intensity compared to steady state (n=12). Compared to the RT-qPCR method, the sensitivity, specificity, and accuracy of NSP12-gated SNPs were calculated as 100 %, 83 %, and 92 %, respectively. Finally, this modifiable nanoparticle system is a high-performance sensing technique that could take advantage of upcoming point-of-care testing markets for viral infection detections. Here, universal-modifiable probe-gated silica nanoparticles (SNPs) based lateral flow assay (LFA) is developed in the interest of the rapid and early detection of viral infections. The most superior advantage of the rapid assay is its utility in detecting various sides of the virus directly from the human swab samples and its adaptability to detect various types of viruses. The NSP12, NSP9, and E gene targets of CoV-2 were used as detection targets.image en_US
dc.description.sponsorship This project was supported by the Turkish Academy of Sciences (GEBIP grant to Bilge Guvenc Tuna).; Turkish Academy of Sciences (GEBIP) en_US
dc.description.sponsorship This project was supported by the Turkish Academy of Sciences (GEBIP grant to Bilge Guvenc Tuna). en_US
dc.identifier.doi 10.1002/open.202300120
dc.identifier.issn 2191-1363
dc.identifier.scopus 2-s2.0-85173821600
dc.identifier.uri https://doi.org/10.1002/open.202300120
dc.identifier.uri https://hdl.handle.net/20.500.14411/2159
dc.language.iso en en_US
dc.publisher Wiley-v C H verlag Gmbh en_US
dc.rights info:eu-repo/semantics/openAccess en_US
dc.subject detection of viral infection en_US
dc.subject fluorescence-based LFA en_US
dc.subject gated-SNPs en_US
dc.subject lateral flow assay en_US
dc.subject silica nanoparticles en_US
dc.title Direct Detection of Viral Infections From Swab Samples by Probe-Gated Silica Nanoparticle-Based Lateral Flow Assay en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.id Tuna, Bilge Guvenc/0000-0003-1348-1336
gdc.author.id Özalp, Veli Cengiz/0000-0002-7659-5990
gdc.author.id YALCINKAYA, DILARA BUSE/0000-0002-8712-2179
gdc.author.institutional Özalp, Veli Cengiz
gdc.author.scopusid 57642668500
gdc.author.scopusid 7102693052
gdc.author.scopusid 57226068563
gdc.author.scopusid 57643402800
gdc.author.scopusid 6504450287
gdc.author.scopusid 57189699950
gdc.author.wosid Tuna, Bilge Guvenc/AAB-5827-2020
gdc.author.wosid Özalp, Veli Cengiz/B-2940-2009
gdc.coar.access open access
gdc.coar.type text::journal::journal article
gdc.description.department Atılım University en_US
gdc.description.departmenttemp [Durdabak, Dilara Buse; Tuna, Bilge Guvenc] Yeditepe Univ, Fac Med, Dept Biophys, TR-34755 Istanbul, Turkiye; [Dogan, Soner] Yeditepe Univ, Dept Med Biol, Fac Med, TR-34755 Istanbul, Turkiye; [Tekol, Serap Demir] Univ Hlth Sci, Kartal Dr Lutfi Kirdar City Hosp, Dept Clin Microbiol, TR-34865 Istanbul, Turkiye; [Celik, Caner] Mem Sisli Hosp, Dept Emergency Med Serv, Istanbul, Turkiye; [Ozalp, Veli Cengiz] Atilim Univ, Fac Med, Dept Med Biol, TR-06830 Ankara, Turkiye en_US
gdc.description.issue 2 en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.volume 13 en_US
gdc.description.wosquality Q3
gdc.identifier.pmid 37824210
gdc.identifier.wos WOS:001079467600001
gdc.scopus.citedcount 1
gdc.wos.citedcount 1
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