Conformational Behaviors of Trans-2,3 Trans-2,5 a Complete Basis Set, Hybrid-Density Functional Theory Study and Natural Bond Orbital Interpretations

dc.contributor.author Nori-Shargh, Davood
dc.contributor.author Kayı, Hakan
dc.contributor.author Mousavi, Seiedeh Negar
dc.contributor.author Kayi, Hakan
dc.contributor.author Kayı, Hakan
dc.contributor.other Chemical Engineering
dc.contributor.other Chemical Engineering
dc.date.accessioned 2024-07-05T14:27:34Z
dc.date.available 2024-07-05T14:27:34Z
dc.date.issued 2014
dc.description Kayi, Hakan/0000-0001-7300-0325 en_US
dc.description.abstract Complete basis set CBS-4, hybrid-density functional theory (hybrid-DFT: B3LYP/6-311+G**) based methods and natural bond orbital (NBO) interpretations have been used to examine the contributions of the hyperconjugative, electrostatic, and steric effects on the conformational behaviors of trans-2,3-dihalo-1,4-diselenane [halo = F (1), Cl (2), Br (3)] and trans-2,5-dihalo-1,4-diselenane [halo = F (4), Cl (5), Br (6)]. Both levels of theory showed that the axial conformation stability, compared to its corresponding equatorial conformation, decreases from compounds 1 -> 3 and 4 -> 6. Based on the results obtained from the NBO analysis, there are significant anomeric effects for compounds 1-6. The anomeric effect associated with the electron delocalization is in favor of the axial conformation and increases from compounds 1 -> 3 and 4 -> 6. On the other hand, dipole moment differences between the axial and equatorial conformations [Delta(mu(eq) - mu(ax))] decrease from compounds 1 -> 3. Although Delta(mu(eq)-mu(ax)) parameter decreases from compound 1 to compound 3, the dipole moment values of the axial conformations are smaller than those of their corresponding equatorial conformations. Therefore, the anomeric effect associated with the electron delocalizations (for halogen-C-Se segments) and the electrostatic model associated with the dipole-dipole interactions fail to account for the increase of the equatorial conformations stability on going from compound 1 to compound 3. Since there is no dipole moment for the axial and equatorial conformations of compounds 4-6, consequently, the conformational preferences in compounds 1-6 is in general dictated by the steric hindrance factor associated with the 1,3-syn-axial repulsions. Importantly, the CBS-4 results show that the entropy difference (Delta S) between the equatorial axial conformations increases from compounds 1 -> 3 and 4 -> 6. This fact can be explained by the anomeric effect associated with the electron delocalization which affects the C-2-Se bond orders and increase the rigidity of the corresponding rings. The Gibbs free energy difference values between the axial and equatorial conformations (i.e. Delta G(ax-ax) and Delta G(eq-eq)) of compounds 1 and 4, 2 and 5 and also 3 and 6 have been calculated. The correlations between the anomeric effect, electrostatic model, Delta G(eq-ax), Delta G(ax-ax), Delta G(eq-eq), bond orders, dipole-dipole interactions, structural parameters and conformational behaviors of compounds 1-6 have been investigated. en_US
dc.identifier.doi 10.1007/s00894-014-2249-x
dc.identifier.issn 1610-2940
dc.identifier.issn 0948-5023
dc.identifier.scopus 2-s2.0-84901563380
dc.identifier.uri https://doi.org/10.1007/s00894-014-2249-x
dc.identifier.uri https://hdl.handle.net/20.500.14411/249
dc.language.iso en en_US
dc.publisher Springer en_US
dc.relation.ispartof Journal of Molecular Modeling
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.subject Anomeric effects en_US
dc.subject Stereoelectronic interactions en_US
dc.subject Molecular modeling en_US
dc.subject Abinitio en_US
dc.subject NBO en_US
dc.subject dihalo-1,4-diselenanes en_US
dc.title Conformational Behaviors of Trans-2,3 Trans-2,5 a Complete Basis Set, Hybrid-Density Functional Theory Study and Natural Bond Orbital Interpretations en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.id Kayi, Hakan/0000-0001-7300-0325
gdc.author.scopusid 6701819893
gdc.author.scopusid 46461663400
gdc.author.scopusid 22938517300
gdc.author.wosid Kayi, Hakan/C-7300-2009
gdc.bip.impulseclass C4
gdc.bip.influenceclass C5
gdc.bip.popularityclass C5
gdc.coar.access metadata only access
gdc.coar.type text::journal::journal article
gdc.collaboration.industrial false
gdc.description.department Atılım University en_US
gdc.description.departmenttemp [Nori-Shargh, Davood; Mousavi, Seiedeh Negar] Islamic Azad Univ, Arak Branch, Dept Chem, Arak, Iran; [Nori-Shargh, Davood] Univ Texas Austin, Dept Chem & Biochem, Inst Theoret Chem, Austin, TX 78712 USA; [Kayi, Hakan] Atilim Univ, Dept Chem Engn & Appl Chem, TR-06836 Ankara, Turkey en_US
gdc.description.issue 5 en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q3
gdc.description.volume 20 en_US
gdc.description.wosquality Q3
gdc.identifier.openalex W2019478984
gdc.identifier.pmid 24817665
gdc.identifier.wos WOS:000336306200002
gdc.index.type WoS
gdc.index.type Scopus
gdc.index.type PubMed
gdc.oaire.diamondjournal false
gdc.oaire.impulse 5.0
gdc.oaire.influence 2.7823746E-9
gdc.oaire.isgreen false
gdc.oaire.keywords Models, Molecular
gdc.oaire.keywords Structure-Activity Relationship
gdc.oaire.keywords Energy Transfer
gdc.oaire.keywords Models, Chemical
gdc.oaire.keywords Molecular Structure
gdc.oaire.keywords Organoselenium Compounds
gdc.oaire.keywords Static Electricity
gdc.oaire.keywords Computer Simulation
gdc.oaire.popularity 3.7212289E-9
gdc.oaire.publicfunded false
gdc.oaire.sciencefields 01 natural sciences
gdc.oaire.sciencefields 0104 chemical sciences
gdc.openalex.collaboration International
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gdc.opencitations.count 9
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gdc.virtual.author Kayı, Hakan
gdc.wos.citedcount 8
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