Detection of spermatogonial stem/progenitor cells in prepubertal mouse testis with deep learning

dc.contributor.author Kahveci, Burak
dc.contributor.author Onen, Selin
dc.contributor.author Akal, Fuat
dc.contributor.author Korkusuz, Petek
dc.date.accessioned 2024-07-05T15:24:58Z
dc.date.available 2024-07-05T15:24:58Z
dc.date.issued 2023
dc.description Kahveci, Burak/0000-0001-7041-0986; Onen, Selin/0000-0002-3255-3035; KORKUSUZ, PETEK/0000-0002-7553-3915 en_US
dc.description.abstract PurposeRapid and easy detection of spermatogonial stem/progenitor cells (SSPCs) is crucial for clinicians dealing with male infertility caused by prepubertal testicular damage. Deep learning (DL) methods may offer visual tools for tracking SSPCs on testicular strips of prepubertal animal models. The purpose of this study is to detect and count the seminiferous tubules and SSPCs in newborn mouse testis sections using a DL method.MethodsTesticular sections of the C57BL/6-type newborn mice were obtained and enumerated. Odd-numbered sections were stained with hematoxylin and eosin (H&E), and even-numbered sections were immune labeled (IL) with SSPC specific marker, SALL4. Seminiferous tubule and SSPC datasets were created using odd-numbered sections. SALL4-labeled sections were used as positive control. The YOLO object detection model based on DL was used to detect seminiferous tubules and stem cells.ResultsTest scores of the DL model in seminiferous tubules were obtained as 0.98 mAP, 0.93 precision, 0.96 recall, and 0.94 f1-score. The SSPC test scores were obtained as 0.88 mAP, 0.80 precision, 0.93 recall, and 0.82 f1-score.ConclusionSeminiferous tubules and SSPCs on prepubertal testicles were detected with a high sensitivity by preventing human-induced errors. Thus, the first step was taken for a system that automates the detection and counting process of these cells in the infertility clinic. en_US
dc.description.sponsorship Hacettepe University Scientific Research Project Coordination Unit; TUBITAK (The Scientific and Technological Research Council of Turkey) 1001 program [TYL-2019-18375] en_US
dc.description.sponsorship This work was financially supported by Hacettepe University Scientific Research Project Coordination Unit; the (#TYL-2019-18375) TUBITAK (The Scientific and Technological Research Council of Turkey) 1001 program supported Burak Kahveci as a scholar (#218S421). en_US
dc.identifier.doi 10.1007/s10815-023-02784-1
dc.identifier.issn 1058-0468
dc.identifier.issn 1573-7330
dc.identifier.scopus 2-s2.0-85151377060
dc.identifier.uri https://doi.org/10.1007/s10815-023-02784-1
dc.identifier.uri https://hdl.handle.net/20.500.14411/2487
dc.language.iso en en_US
dc.publisher Springer/plenum Publishers en_US
dc.relation.ispartof Journal of Assisted Reproduction and Genetics
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.subject Spermatogonial stem en_US
dc.subject progenitor cells en_US
dc.subject Testis en_US
dc.subject YOLO object detection en_US
dc.subject Deep learning en_US
dc.subject Computer vision en_US
dc.title Detection of spermatogonial stem/progenitor cells in prepubertal mouse testis with deep learning en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.id Kahveci, Burak/0000-0001-7041-0986
gdc.author.id Onen, Selin/0000-0002-3255-3035
gdc.author.id KORKUSUZ, PETEK/0000-0002-7553-3915
gdc.author.scopusid 57775962700
gdc.author.scopusid 57204933836
gdc.author.scopusid 22233542100
gdc.author.scopusid 6602104436
gdc.author.wosid Akal, Fuat/C-6912-2014
gdc.author.wosid Kahveci, Burak/GXE-9669-2022
gdc.author.wosid Onen, Selin/IWU-4803-2023
gdc.bip.impulseclass C5
gdc.bip.influenceclass C5
gdc.bip.popularityclass C4
gdc.coar.access metadata only access
gdc.coar.type text::journal::journal article
gdc.description.department Atılım University en_US
gdc.description.departmenttemp [Kahveci, Burak] Hacettepe Univ, Grad Sch Sci & Engn, Dept Bioengn, Ankara, Turkiye; [Onen, Selin] Hacettepe Univ, Grad Sch Hlth Sci, Dept Stem Cell Sci, Ankara, Turkiye; [Onen, Selin] Atilim Univ, Fac Med, Dept Med Biol, Ankara, Turkiye; [Akal, Fuat] Hacettepe Univ, Comp Engn Dept, Ankara, Turkiye; [Korkusuz, Petek] Hacettepe Univ, Fac Med, Dept Histol & Embryol, TR-06100 Ankara, Turkiye en_US
gdc.description.endpage 1195 en_US
gdc.description.issue 5 en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q2
gdc.description.startpage 1187 en_US
gdc.description.volume 40 en_US
gdc.description.wosquality Q1
gdc.identifier.openalex W4361273418
gdc.identifier.pmid 36995558
gdc.identifier.wos WOS:000960852900001
gdc.oaire.diamondjournal false
gdc.oaire.impulse 3.0
gdc.oaire.influence 2.6242393E-9
gdc.oaire.isgreen true
gdc.oaire.keywords Male
gdc.oaire.keywords Mice, Inbred C57BL
gdc.oaire.keywords Mice
gdc.oaire.keywords Deep Learning
gdc.oaire.keywords Stem Cells
gdc.oaire.keywords Testis
gdc.oaire.keywords Animals
gdc.oaire.keywords Humans
gdc.oaire.keywords Spermatogenesis
gdc.oaire.keywords Spermatogonia
gdc.oaire.popularity 4.4559054E-9
gdc.oaire.publicfunded false
gdc.openalex.collaboration National
gdc.openalex.fwci 1.91618577
gdc.openalex.normalizedpercentile 0.79
gdc.opencitations.count 2
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gdc.scopus.citedcount 2
gdc.virtual.author Önen, Selin
gdc.wos.citedcount 3
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