Detection of spermatogonial stem/progenitor cells in prepubertal mouse testis with deep learning
dc.authorid | Kahveci, Burak/0000-0001-7041-0986 | |
dc.authorid | Onen, Selin/0000-0002-3255-3035 | |
dc.authorid | KORKUSUZ, PETEK/0000-0002-7553-3915 | |
dc.authorscopusid | 57775962700 | |
dc.authorscopusid | 57204933836 | |
dc.authorscopusid | 22233542100 | |
dc.authorscopusid | 6602104436 | |
dc.authorwosid | Akal, Fuat/C-6912-2014 | |
dc.authorwosid | Kahveci, Burak/GXE-9669-2022 | |
dc.authorwosid | Onen, Selin/IWU-4803-2023 | |
dc.contributor.author | Kahveci, Burak | |
dc.contributor.author | Onen, Selin | |
dc.contributor.author | Akal, Fuat | |
dc.contributor.author | Korkusuz, Petek | |
dc.contributor.other | Basic Sciences | |
dc.date.accessioned | 2024-07-05T15:24:58Z | |
dc.date.available | 2024-07-05T15:24:58Z | |
dc.date.issued | 2023 | |
dc.department | Atılım University | en_US |
dc.department-temp | [Kahveci, Burak] Hacettepe Univ, Grad Sch Sci & Engn, Dept Bioengn, Ankara, Turkiye; [Onen, Selin] Hacettepe Univ, Grad Sch Hlth Sci, Dept Stem Cell Sci, Ankara, Turkiye; [Onen, Selin] Atilim Univ, Fac Med, Dept Med Biol, Ankara, Turkiye; [Akal, Fuat] Hacettepe Univ, Comp Engn Dept, Ankara, Turkiye; [Korkusuz, Petek] Hacettepe Univ, Fac Med, Dept Histol & Embryol, TR-06100 Ankara, Turkiye | en_US |
dc.description | Kahveci, Burak/0000-0001-7041-0986; Onen, Selin/0000-0002-3255-3035; KORKUSUZ, PETEK/0000-0002-7553-3915 | en_US |
dc.description.abstract | PurposeRapid and easy detection of spermatogonial stem/progenitor cells (SSPCs) is crucial for clinicians dealing with male infertility caused by prepubertal testicular damage. Deep learning (DL) methods may offer visual tools for tracking SSPCs on testicular strips of prepubertal animal models. The purpose of this study is to detect and count the seminiferous tubules and SSPCs in newborn mouse testis sections using a DL method.MethodsTesticular sections of the C57BL/6-type newborn mice were obtained and enumerated. Odd-numbered sections were stained with hematoxylin and eosin (H&E), and even-numbered sections were immune labeled (IL) with SSPC specific marker, SALL4. Seminiferous tubule and SSPC datasets were created using odd-numbered sections. SALL4-labeled sections were used as positive control. The YOLO object detection model based on DL was used to detect seminiferous tubules and stem cells.ResultsTest scores of the DL model in seminiferous tubules were obtained as 0.98 mAP, 0.93 precision, 0.96 recall, and 0.94 f1-score. The SSPC test scores were obtained as 0.88 mAP, 0.80 precision, 0.93 recall, and 0.82 f1-score.ConclusionSeminiferous tubules and SSPCs on prepubertal testicles were detected with a high sensitivity by preventing human-induced errors. Thus, the first step was taken for a system that automates the detection and counting process of these cells in the infertility clinic. | en_US |
dc.description.sponsorship | Hacettepe University Scientific Research Project Coordination Unit; TUBITAK (The Scientific and Technological Research Council of Turkey) 1001 program [TYL-2019-18375] | en_US |
dc.description.sponsorship | This work was financially supported by Hacettepe University Scientific Research Project Coordination Unit; the (#TYL-2019-18375) TUBITAK (The Scientific and Technological Research Council of Turkey) 1001 program supported Burak Kahveci as a scholar (#218S421). | en_US |
dc.identifier.citation | 1 | |
dc.identifier.doi | 10.1007/s10815-023-02784-1 | |
dc.identifier.endpage | 1195 | en_US |
dc.identifier.issn | 1058-0468 | |
dc.identifier.issn | 1573-7330 | |
dc.identifier.issue | 5 | en_US |
dc.identifier.pmid | 36995558 | |
dc.identifier.scopus | 2-s2.0-85151377060 | |
dc.identifier.scopusquality | Q2 | |
dc.identifier.startpage | 1187 | en_US |
dc.identifier.uri | https://doi.org/10.1007/s10815-023-02784-1 | |
dc.identifier.uri | https://hdl.handle.net/20.500.14411/2487 | |
dc.identifier.volume | 40 | en_US |
dc.identifier.wos | WOS:000960852900001 | |
dc.identifier.wosquality | Q2 | |
dc.institutionauthor | Önen, Selin | |
dc.language.iso | en | en_US |
dc.publisher | Springer/plenum Publishers | en_US |
dc.relation.publicationcategory | Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı | en_US |
dc.rights | info:eu-repo/semantics/closedAccess | en_US |
dc.subject | Spermatogonial stem | en_US |
dc.subject | progenitor cells | en_US |
dc.subject | Testis | en_US |
dc.subject | YOLO object detection | en_US |
dc.subject | Deep learning | en_US |
dc.subject | Computer vision | en_US |
dc.title | Detection of spermatogonial stem/progenitor cells in prepubertal mouse testis with deep learning | en_US |
dc.type | Article | en_US |
dspace.entity.type | Publication | |
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