Detection of spermatogonial stem/progenitor cells in prepubertal mouse testis with deep learning

dc.authorid Kahveci, Burak/0000-0001-7041-0986
dc.authorid Onen, Selin/0000-0002-3255-3035
dc.authorid KORKUSUZ, PETEK/0000-0002-7553-3915
dc.authorscopusid 57775962700
dc.authorscopusid 57204933836
dc.authorscopusid 22233542100
dc.authorscopusid 6602104436
dc.authorwosid Akal, Fuat/C-6912-2014
dc.authorwosid Kahveci, Burak/GXE-9669-2022
dc.authorwosid Onen, Selin/IWU-4803-2023
dc.contributor.author Kahveci, Burak
dc.contributor.author Onen, Selin
dc.contributor.author Akal, Fuat
dc.contributor.author Korkusuz, Petek
dc.contributor.other Basic Sciences
dc.date.accessioned 2024-07-05T15:24:58Z
dc.date.available 2024-07-05T15:24:58Z
dc.date.issued 2023
dc.department Atılım University en_US
dc.department-temp [Kahveci, Burak] Hacettepe Univ, Grad Sch Sci & Engn, Dept Bioengn, Ankara, Turkiye; [Onen, Selin] Hacettepe Univ, Grad Sch Hlth Sci, Dept Stem Cell Sci, Ankara, Turkiye; [Onen, Selin] Atilim Univ, Fac Med, Dept Med Biol, Ankara, Turkiye; [Akal, Fuat] Hacettepe Univ, Comp Engn Dept, Ankara, Turkiye; [Korkusuz, Petek] Hacettepe Univ, Fac Med, Dept Histol & Embryol, TR-06100 Ankara, Turkiye en_US
dc.description Kahveci, Burak/0000-0001-7041-0986; Onen, Selin/0000-0002-3255-3035; KORKUSUZ, PETEK/0000-0002-7553-3915 en_US
dc.description.abstract PurposeRapid and easy detection of spermatogonial stem/progenitor cells (SSPCs) is crucial for clinicians dealing with male infertility caused by prepubertal testicular damage. Deep learning (DL) methods may offer visual tools for tracking SSPCs on testicular strips of prepubertal animal models. The purpose of this study is to detect and count the seminiferous tubules and SSPCs in newborn mouse testis sections using a DL method.MethodsTesticular sections of the C57BL/6-type newborn mice were obtained and enumerated. Odd-numbered sections were stained with hematoxylin and eosin (H&E), and even-numbered sections were immune labeled (IL) with SSPC specific marker, SALL4. Seminiferous tubule and SSPC datasets were created using odd-numbered sections. SALL4-labeled sections were used as positive control. The YOLO object detection model based on DL was used to detect seminiferous tubules and stem cells.ResultsTest scores of the DL model in seminiferous tubules were obtained as 0.98 mAP, 0.93 precision, 0.96 recall, and 0.94 f1-score. The SSPC test scores were obtained as 0.88 mAP, 0.80 precision, 0.93 recall, and 0.82 f1-score.ConclusionSeminiferous tubules and SSPCs on prepubertal testicles were detected with a high sensitivity by preventing human-induced errors. Thus, the first step was taken for a system that automates the detection and counting process of these cells in the infertility clinic. en_US
dc.description.sponsorship Hacettepe University Scientific Research Project Coordination Unit; TUBITAK (The Scientific and Technological Research Council of Turkey) 1001 program [TYL-2019-18375] en_US
dc.description.sponsorship This work was financially supported by Hacettepe University Scientific Research Project Coordination Unit; the (#TYL-2019-18375) TUBITAK (The Scientific and Technological Research Council of Turkey) 1001 program supported Burak Kahveci as a scholar (#218S421). en_US
dc.identifier.citationcount 1
dc.identifier.doi 10.1007/s10815-023-02784-1
dc.identifier.endpage 1195 en_US
dc.identifier.issn 1058-0468
dc.identifier.issn 1573-7330
dc.identifier.issue 5 en_US
dc.identifier.pmid 36995558
dc.identifier.scopus 2-s2.0-85151377060
dc.identifier.scopusquality Q2
dc.identifier.startpage 1187 en_US
dc.identifier.uri https://doi.org/10.1007/s10815-023-02784-1
dc.identifier.uri https://hdl.handle.net/20.500.14411/2487
dc.identifier.volume 40 en_US
dc.identifier.wos WOS:000960852900001
dc.identifier.wosquality Q2
dc.institutionauthor Önen, Selin
dc.language.iso en en_US
dc.publisher Springer/plenum Publishers en_US
dc.relation.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.scopus.citedbyCount 1
dc.subject Spermatogonial stem en_US
dc.subject progenitor cells en_US
dc.subject Testis en_US
dc.subject YOLO object detection en_US
dc.subject Deep learning en_US
dc.subject Computer vision en_US
dc.title Detection of spermatogonial stem/progenitor cells in prepubertal mouse testis with deep learning en_US
dc.type Article en_US
dc.wos.citedbyCount 1
dspace.entity.type Publication
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