Detection of spermatogonial stem/progenitor cells in prepubertal mouse testis with deep learning

dc.authoridKahveci, Burak/0000-0001-7041-0986
dc.authoridOnen, Selin/0000-0002-3255-3035
dc.authoridKORKUSUZ, PETEK/0000-0002-7553-3915
dc.authorscopusid57775962700
dc.authorscopusid57204933836
dc.authorscopusid22233542100
dc.authorscopusid6602104436
dc.authorwosidAkal, Fuat/C-6912-2014
dc.authorwosidKahveci, Burak/GXE-9669-2022
dc.authorwosidOnen, Selin/IWU-4803-2023
dc.contributor.authorKahveci, Burak
dc.contributor.authorOnen, Selin
dc.contributor.authorAkal, Fuat
dc.contributor.authorKorkusuz, Petek
dc.contributor.otherBasic Sciences
dc.date.accessioned2024-07-05T15:24:58Z
dc.date.available2024-07-05T15:24:58Z
dc.date.issued2023
dc.departmentAtılım Universityen_US
dc.department-temp[Kahveci, Burak] Hacettepe Univ, Grad Sch Sci & Engn, Dept Bioengn, Ankara, Turkiye; [Onen, Selin] Hacettepe Univ, Grad Sch Hlth Sci, Dept Stem Cell Sci, Ankara, Turkiye; [Onen, Selin] Atilim Univ, Fac Med, Dept Med Biol, Ankara, Turkiye; [Akal, Fuat] Hacettepe Univ, Comp Engn Dept, Ankara, Turkiye; [Korkusuz, Petek] Hacettepe Univ, Fac Med, Dept Histol & Embryol, TR-06100 Ankara, Turkiyeen_US
dc.descriptionKahveci, Burak/0000-0001-7041-0986; Onen, Selin/0000-0002-3255-3035; KORKUSUZ, PETEK/0000-0002-7553-3915en_US
dc.description.abstractPurposeRapid and easy detection of spermatogonial stem/progenitor cells (SSPCs) is crucial for clinicians dealing with male infertility caused by prepubertal testicular damage. Deep learning (DL) methods may offer visual tools for tracking SSPCs on testicular strips of prepubertal animal models. The purpose of this study is to detect and count the seminiferous tubules and SSPCs in newborn mouse testis sections using a DL method.MethodsTesticular sections of the C57BL/6-type newborn mice were obtained and enumerated. Odd-numbered sections were stained with hematoxylin and eosin (H&E), and even-numbered sections were immune labeled (IL) with SSPC specific marker, SALL4. Seminiferous tubule and SSPC datasets were created using odd-numbered sections. SALL4-labeled sections were used as positive control. The YOLO object detection model based on DL was used to detect seminiferous tubules and stem cells.ResultsTest scores of the DL model in seminiferous tubules were obtained as 0.98 mAP, 0.93 precision, 0.96 recall, and 0.94 f1-score. The SSPC test scores were obtained as 0.88 mAP, 0.80 precision, 0.93 recall, and 0.82 f1-score.ConclusionSeminiferous tubules and SSPCs on prepubertal testicles were detected with a high sensitivity by preventing human-induced errors. Thus, the first step was taken for a system that automates the detection and counting process of these cells in the infertility clinic.en_US
dc.description.sponsorshipHacettepe University Scientific Research Project Coordination Unit; TUBITAK (The Scientific and Technological Research Council of Turkey) 1001 program [TYL-2019-18375]en_US
dc.description.sponsorshipThis work was financially supported by Hacettepe University Scientific Research Project Coordination Unit; the (#TYL-2019-18375) TUBITAK (The Scientific and Technological Research Council of Turkey) 1001 program supported Burak Kahveci as a scholar (#218S421).en_US
dc.identifier.citation1
dc.identifier.doi10.1007/s10815-023-02784-1
dc.identifier.endpage1195en_US
dc.identifier.issn1058-0468
dc.identifier.issn1573-7330
dc.identifier.issue5en_US
dc.identifier.pmid36995558
dc.identifier.scopus2-s2.0-85151377060
dc.identifier.scopusqualityQ2
dc.identifier.startpage1187en_US
dc.identifier.urihttps://doi.org/10.1007/s10815-023-02784-1
dc.identifier.urihttps://hdl.handle.net/20.500.14411/2487
dc.identifier.volume40en_US
dc.identifier.wosWOS:000960852900001
dc.identifier.wosqualityQ2
dc.institutionauthorÖnen, Selin
dc.language.isoenen_US
dc.publisherSpringer/plenum Publishersen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.subjectSpermatogonial stemen_US
dc.subjectprogenitor cellsen_US
dc.subjectTestisen_US
dc.subjectYOLO object detectionen_US
dc.subjectDeep learningen_US
dc.subjectComputer visionen_US
dc.titleDetection of spermatogonial stem/progenitor cells in prepubertal mouse testis with deep learningen_US
dc.typeArticleen_US
dspace.entity.typePublication
relation.isAuthorOfPublication71ff6244-19b2-496c-9b5d-a5dfea4572a5
relation.isAuthorOfPublication.latestForDiscovery71ff6244-19b2-496c-9b5d-a5dfea4572a5
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